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    LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344899, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344899
    Gene description
    photosystem II 10 kDa polypeptide, chloroplastic
    Locus tag
    OSNPB_080200300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 3223.2), roots after flowering (RPKM 2724.8) and 4 other tissues See more
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    Genomic context

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    See LOC4344899 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5806490..5808453, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269405 Neighboring gene acyl-[acyl-carrier-protein] desaturase 7, chloroplastic-like Neighboring gene KH domain-containing protein At4g18375 Neighboring gene cold-responsive protein kinase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem II 10 kDa polypeptide, chloroplastic
    Names
    Os08g0200300
    P0556A11.19
    photosystem II 10K protein
    putative photosystem II 10K protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      5806490..5808453 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794299.1 → XP_015649785.1  photosystem II 10 kDa polypeptide, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A218KL41, A2YS77, Q0J7E1, Q6ZBV1
      Conserved Domains (1) summary
      PLN00053
      Location:16 → 130
      PLN00053; photosystem II subunit R; Provisional

    2. XM_015794300.1 → XP_015649786.1  photosystem II 10 kDa polypeptide, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl04707
      Location:16 → 63
      PsbR; Photosystem II 10 kDa polypeptide PsbR
    Nucleotide Protein
    Heading Accession and Version

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