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    LOC4329955 S-adenosylmethionine decarboxylase proenzyme-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329955, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329955
    Gene description
    S-adenosylmethionine decarboxylase proenzyme-like
    Locus tag
    OSNPB_020611200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    adometDC2; OJ1004_A05.7; OJ1476_F05.33
    Expression
    Ubiquitous expression in roots before flowering (RPKM 298.0), flower buds (RPKM 180.1) and 6 other tissues See more
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    Genomic context

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    See LOC4329955 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24529400..24531009)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24045234..24048281)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene inorganic phosphate transporter 1-1-like Neighboring gene cytochrome P450 734A4-like Neighboring gene histone-lysine N-methyltransferase ASHR3-like Neighboring gene pentatricopeptide repeat-containing protein At5g61990, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of monocot and dicot plant S-adenosyl-l-methionine decarboxylase gene families including identification in the mRNA of a highly conserved pair of upstream overlapping open reading frames. Franceschetti M, et al. Biochem J, 2001 Jan 15. PMID 11139406, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables adenosylmethionine decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spermidine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-adenosylmethionine decarboxylase proenzyme-like
    Names
    Os02g0611200
    S-adenosylmethionine decarboxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24529400..24531009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022696.2 → XP_025878481.1  S-adenosylmethionine decarboxylase proenzyme-like

      UniProtKB/TrEMBL
      B9F113, Q6K644, Q6K9B8, Q9SC67
      Conserved Domains (1) summary
      PLN02524
      Location:10 → 368
      PLN02524; S-adenosylmethionine decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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