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    LOC4342595 chromatin remodeling protein EBS [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342595, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342595
    Gene description
    chromatin remodeling protein EBS
    Locus tag
    OSNPB_070186400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1339_B08.19
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    Genomic context

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    See LOC4342595 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4667487..4675340)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4606684..4614569)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene uncharacterized LOC112939696 Neighboring gene disease resistance protein RPM1 Neighboring gene general transcriptional corepressor CYC8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromatin remodeling protein EBS
    Names
    Os07g0186400
    P0506C07.10
    chromatin remodeling protein SHL
    putative ES43 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4667487..4675340
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792408.3 → XP_015647894.1  chromatin remodeling protein EBS isoform X1

      UniProtKB/TrEMBL
      A0A0P0X312, B8B7X1, Q0D838, Q69WP3, Q7XI22
      Conserved Domains (2) summary
      cd04714
      Location:20 → 158
      BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
      cl22851
      Location:142 → 188
      PHD_SF; PHD finger superfamily

    2. XM_015792409.3 → XP_015647895.1  chromatin remodeling protein EBS isoform X2

      UniProtKB/TrEMBL
      Q0D838
      Conserved Domains (2) summary
      cd04714
      Location:20 → 158
      BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
      cl22851
      Location:142 → 188
      PHD_SF; PHD finger superfamily
    Nucleotide Protein
    Heading Accession and Version

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