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    LOC4338717 endo-1,3;1,4-beta-D-glucanase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338717, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4338717
    Gene description
    endo-1,3;1,4-beta-D-glucanase
    Locus tag
    OSNPB_050399200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 43.3), flowers (RPKM 15.4) and 3 other tissues See more
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    Genomic context

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    See LOC4338717 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19415284..19423252)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL7 Neighboring gene endo-1,3;1,4-beta-D-glucanase Neighboring gene chitinase 2-like Neighboring gene chitinase 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endo-1,3;1,4-beta-D-glucanase
    Names
    Os05g0399200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19415284..19423252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784605.2 → XP_015640091.1  endo-1,3;1,4-beta-D-glucanase isoform X2

      UniProtKB/TrEMBL
      A2Y4F4
      Conserved Domains (1) summary
      cl21494
      Location:19 → 198
      Abhydrolase; alpha/beta hydrolases

    2. XM_015784602.2 → XP_015640088.1  endo-1,3;1,4-beta-D-glucanase isoform X1

      UniProtKB/TrEMBL
      A0A0P0WM28, A2Y4F4, B9FPH5, Q688M8
      Conserved Domains (1) summary
      cl21494
      Location:19 → 239
      Abhydrolase; alpha/beta hydrolases

    3. XM_015784603.2 → XP_015640089.1  endo-1,3;1,4-beta-D-glucanase isoform X1

      UniProtKB/TrEMBL
      A0A0P0WM28, A2Y4F4, B9FPH5, Q688M8
      Conserved Domains (1) summary
      cl21494
      Location:19 → 239
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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