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    LOC4335934 auxin response factor 9-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335934, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4335934
    Gene description
    auxin response factor 9-like
    Locus tag
    OSNPB_040442000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARF9
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    Genomic context

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    See LOC4335934 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22407767..22413549)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22006221..22012016)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 4.4 Neighboring gene uncharacterized LOC4335933 Neighboring gene polyadenylate-binding protein-interacting protein 7 Neighboring gene uncharacterized LOC4335936 Neighboring gene two-component response regulator ORR1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 9
    Names
    LOC_Os04g36054
    OSJNBa0064D20.11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419353.1 → NP_001406282.1  auxin response factor 9

      Status: VALIDATED

      Source sequence(s)
      AK064925, AP014960, CI640514, CI756114
      UniProtKB/Swiss-Prot
      A0A0P0WAR6, Q0JCZ4, Q7XN92
      UniProtKB/TrEMBL
      B9FFC8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22407767..22413549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309157.1 → XP_066165254.1  auxin response factor 9 isoform X1

      UniProtKB/TrEMBL
      B9FFC8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JCZ4.1 GenPept UniProtKB/Swiss-Prot:Q0JCZ4

    Gene LinkOut

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    Research Materials