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    LOC4327103 protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327103, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327103
    Gene description
    protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic
    Locus tag
    OSNPB_010251000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 21.9), flower buds (RPKM 20.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8296263..8300842)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8284418..8289033)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327100 Neighboring gene uncharacterized LOC4327102 Neighboring gene large ribosomal subunit protein uL3m Neighboring gene E3 ubiquitin-protein ligase hel2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Lipid trafficking between the endoplasmic reticulum and the plastid in Arabidopsis requires the extraplastidic TGD4 protein. Xu C, et al. Plant Cell, 2008 Aug. PMID 18689504, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ER to chloroplast lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in acylglycerol transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic
    Names
    Os01g0251000
    P0434D08.19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8296263..8300842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024363.2 → XP_025880148.1  protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V0M0, B8ABS2, Q0JP16
      Conserved Domains (1) summary
      pfam12600
      Location:327 → 418
      DUF3769; Protein of unknown function (DUF3769)
    Nucleotide Protein
    Heading Accession and Version

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