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    LOC4333936 hypothetical protein At1g04090 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333936, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333936
    Gene description
    hypothetical protein At1g04090
    Locus tag
    OSNPB_030721300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 14.4), roots before flowering (RPKM 6.0) and 4 other tissues See more
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    Genomic context

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    See LOC4333936 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30153232..30155782, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29272328..29274656, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable isoaspartyl peptidase/L-asparaginase 2 Neighboring gene protein ILITYHIA Neighboring gene uncharacterized LOC4333937 Neighboring gene uncharacterized LOC4333938

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    hypothetical protein At1g04090
    Names
    Os03g0721300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30153232..30155782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775121.3 → XP_015630607.1  hypothetical protein At1g04090

      UniProtKB/TrEMBL
      A2XLH5, A3AM65, Q8LLP6
      Conserved Domains (1) summary
      pfam06101
      Location:17 → 574
      Vps62; Vacuolar protein sorting-associated protein 62
    Nucleotide Protein
    Heading Accession and Version

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