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    LOC4351721 phosphoribosylamine--glycine ligase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351721, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351721
    Gene description
    phosphoribosylamine--glycine ligase
    Locus tag
    OSNPB_120197100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4351721 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (5045872..5050378, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (5013787..5018373, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107279718 Neighboring gene uncharacterized LOC107279758 Neighboring gene uncharacterized LOC9267371 Neighboring gene translocase of chloroplast 90, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoribosylamine-glycine ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in purine nucleobase biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphoribosylamine--glycine ligase
    Names
    Os12g0197100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      5045872..5050378 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763392.3 → XP_015618878.1  phosphoribosylamine--glycine ligase isoform X2

      UniProtKB/TrEMBL
      A2ZIW4
      Conserved Domains (1) summary
      PLN02257
      Location:85 → 517
      PLN02257; phosphoribosylamine--glycine ligase

    2. XM_015763389.3 → XP_015618875.1  phosphoribosylamine--glycine ligase isoform X1

      UniProtKB/TrEMBL
      A2ZIW4, Q0IPI9, Q2QWF3
      Conserved Domains (1) summary
      PLN02257
      Location:86 → 518
      PLN02257; phosphoribosylamine--glycine ligase

    3. XM_026021829.2 → XP_025877614.1  phosphoribosylamine--glycine ligase isoform X1

      UniProtKB/TrEMBL
      A2ZIW4, Q0IPI9, Q2QWF3
      Conserved Domains (1) summary
      PLN02257
      Location:86 → 518
      PLN02257; phosphoribosylamine--glycine ligase
    Nucleotide Protein
    Heading Accession and Version

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