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    LOC9270332 serine carboxypeptidase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270332, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC9270332
    Gene description
    serine carboxypeptidase 1
    Locus tag
    OSNPB_020463500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9270332 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (16007607..16016714, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (15549273..15558481, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene uncharacterized LOC107279934 Neighboring gene glutathione S-transferase T3 Neighboring gene protein ALP1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in secondary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine carboxypeptidase 1
    Names
    OSJNBa0035A24.20
    Os02g0463500
    putative carboxypeptidase C
    serine carboxypeptidase-like 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      16007607..16016714 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307108.1 → XP_066163205.1  serine carboxypeptidase 1 isoform X3

      UniProtKB/TrEMBL
      B9EZV5

    2. XM_066307109.1 → XP_066163206.1  serine carboxypeptidase 1 isoform X5

      UniProtKB/TrEMBL
      B9EZV5

    3. XM_015768781.3 → XP_015624267.1  serine carboxypeptidase 1 isoform X2

      UniProtKB/TrEMBL
      B9EZV5
      Conserved Domains (1) summary
      pfam00450
      Location:71 → 496
      Peptidase_S10; Serine carboxypeptidase

    4. XM_015768782.3 → XP_015624268.1  serine carboxypeptidase 1 isoform X4

      UniProtKB/TrEMBL
      B9EZV5
      Conserved Domains (1) summary
      pfam00450
      Location:71 → 476
      Peptidase_S10; Serine carboxypeptidase

    5. XM_015768780.3 → XP_015624266.1  serine carboxypeptidase 1 isoform X1

      UniProtKB/TrEMBL
      B9EZV5
      Conserved Domains (1) summary
      pfam00450
      Location:71 → 499
      Peptidase_S10; Serine carboxypeptidase
    Nucleotide Protein
    Heading Accession and Version

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