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    LOC4327560 calcium-dependent protein kinase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327560, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC4327560
    Gene description
    calcium-dependent protein kinase 2-like
    Locus tag
    OSNPB_010808400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CPK2; OsCPK2; OsCDPK2; P0468B07.1
    Expression
    Biased expression in flower buds (RPKM 186.9) and flowers (RPKM 39.5) See more
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    Genomic context

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    See LOC4327560 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34932178..34934984)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34325301..34328118)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA4 Neighboring gene dihydropyrimidinase Neighboring gene transcription factor TGAL1-like Neighboring gene uncharacterized LOC4327561 Neighboring gene uncharacterized LOC112937366 Neighboring gene uncharacterized LOC4327562

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium/calmodulin-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein autophosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-dependent protein kinase 2
    Names
    LOC_Os01g59360
    Os01g0808400
    P0702B09.46
    calcium-dependent protein kinase 34
    putative calcium-dependent protein kinase
    NP_001396064.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409135.1 → NP_001396064.1  calcium-dependent protein kinase 2

      Status: VALIDATED

      Source sequence(s)
      AK112112, AP014957, CI222778, CI258439
      UniProtKB/Swiss-Prot
      Q5VQQ5
      UniProtKB/TrEMBL
      A2WW61, A2ZYU0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34932178..34934984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VQQ5.1 GenPept UniProtKB/Swiss-Prot:Q5VQQ5

    Gene LinkOut

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