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    LOC4340820 very-long-chain 3-oxoacyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340820, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340820
    Gene description
    very-long-chain 3-oxoacyl-CoA reductase 1
    Locus tag
    OSNPB_060300000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 3.3), leaves before flowering (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    See LOC4340820 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11170386..11175003, complement)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene protein transport protein SFT2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ketoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain 3-oxoacyl-CoA reductase 1
    Names
    Os06g0300000
    P0501G08.27
    putative b-keto acyl reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11170386..11175003 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786115.2 → XP_015641601.1  very-long-chain 3-oxoacyl-CoA reductase 1

      UniProtKB/TrEMBL
      A0A0N7KLZ2, B8B0V8, Q5ZA41
      Conserved Domains (2) summary
      PLN02780
      Location:16 → 342
      PLN02780; ketoreductase/ oxidoreductase
      cd05356
      Location:60 → 326
      17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs
    Nucleotide Protein
    Heading Accession and Version

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