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    LOC4342799 uncharacterized LOC4342799 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342799, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4342799
    Gene description
    uncharacterized LOC4342799
    Locus tag
    OSNPB_070238700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Os07g0238800
    Expression
    Ubiquitous expression in flower buds (RPKM 5.9), leaves after flowering (RPKM 5.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342799 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7793335..7800430)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (7713426..7723864)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357344 Neighboring gene uncharacterized LOC136357493 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC107275774

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342799
    Names
    Os07g0238700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      7793335..7800430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312295.1 → XP_066168392.1  uncharacterized protein LOC4342799 isoform X3

      UniProtKB/TrEMBL
      A0A0P0X481, Q0D7K3

    2. XM_066312293.1 → XP_066168390.1  uncharacterized protein LOC4342799 isoform X2

      UniProtKB/TrEMBL
      A2YJR2

    3. XM_066312294.1 → XP_066168391.1  uncharacterized protein LOC4342799 isoform X2

      UniProtKB/TrEMBL
      A2YJR2

    4. XM_066312292.1 → XP_066168389.1  uncharacterized protein LOC4342799 isoform X1

      UniProtKB/TrEMBL
      A2YJR2

    5. XM_066312296.1 → XP_066168393.1  uncharacterized protein LOC4342799 isoform X4

      UniProtKB/TrEMBL
      A2YJR2

    RNA

    1. XR_001547670.3 RNA Sequence

    2. XR_010742497.1 RNA Sequence

    3. XR_010742501.1 RNA Sequence

    4. XR_010742498.1 RNA Sequence

    5. XR_010742499.1 RNA Sequence

    6. XR_001547672.3 RNA Sequence

    7. XR_001547674.3 RNA Sequence

    8. XR_010742500.1 RNA Sequence

    9. XR_001547673.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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