U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4337535 protein MEI2-like 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337535, updated on 17-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4337535
    Gene description
    protein MEI2-like 3
    Locus tag
    OSNPB_050102800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ML3; OML3; OsJ_16784; P0668H12.3
    Expression
    Ubiquitous expression in flower buds (RPKM 16.4), flowers (RPKM 15.7) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4337535 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (168513..175705, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (160739..167929, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337532 Neighboring gene E3 ubiquitin-protein ligase ORTHRUS 2 Neighboring gene vacuolar protein sorting-associated protein 60.2 Neighboring gene basic helix-loop-helix protein 80

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PLASTOCHRON2 regulates leaf initiation and maturation in rice. Kawakatsu T, et al. Plant Cell, 2006 Mar. PMID 16461585, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of meiotic nuclear division IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein MEI2-like 3
    Names
    LOC_Os05g01240
    MEI2-like RNA binding protein
    MEI2-like protein 3
    P0036D10.18

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402463.1 → NP_001389392.1  protein MEI2-like 3

      Status: VALIDATED

      Source sequence(s)
      AB244278, CB674899, CI392389, CI619738
      UniProtKB/Swiss-Prot
      A0A0P0WGV2, Q75M35
      UniProtKB/TrEMBL
      B8AWJ3

    2. NM_001402464.1 → NP_001389393.1  protein MEI2-like 3

      Status: VALIDATED

      Source sequence(s)
      AB244278, CB674899, CI392389, CI615118
      UniProtKB/Swiss-Prot
      A0A0P0WGV2, Q75M35
      UniProtKB/TrEMBL
      B8AWJ3

    3. NM_001402465.1 → NP_001389394.1  protein MEI2-like 3

      Status: VALIDATED

      Source sequence(s)
      AB244278, CB674899, CI392389, CI757337
      UniProtKB/Swiss-Prot
      A0A0P0WGV2, Q75M35
      UniProtKB/TrEMBL
      B8AWJ3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      168513..175705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784761.3 → XP_015640247.1  protein MEI2-like 3 isoform X1

      UniProtKB/TrEMBL
      B8AWJ3
      Conserved Domains (4) summary
      COG0724
      Location:687 → 872
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12531
      Location:732 → 817
      RRM3_MEI2_like; RNA recognition motif 3 (RRM3) found in plant Mei2-like proteins
      cd12276
      Location:304 → 374
      RRM2_MEI2_EAR1_like; RNA recognition motif 2 (RRM2) found in Mei2-like proteins and terminal EAR1-like proteins
      cd12524
      Location:219 → 295
      RRM1_MEI2_like; RNA recognition motif 1 (RRM1) found in plant Mei2-like proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75M35.2 GenPept UniProtKB/Swiss-Prot:Q75M35

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials