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    LOC4352055 uncharacterized LOC4352055 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352055, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4352055
    Gene description
    uncharacterized LOC4352055
    Locus tag
    OSNPB_120408000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 9.5), flower buds (RPKM 8.4) and 5 other tissues See more
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    Genomic context

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    See LOC4352055 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (12779075..12783791, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (12352406..12356936, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein AGL62 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A Neighboring gene pentatricopeptide repeat-containing protein At2g15980 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC4352057

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4352055
    Names
    Os12g0408000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      12779075..12783791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022042.2 → XP_025877827.1  uncharacterized protein LOC4352055 isoform X2

      UniProtKB/TrEMBL
      A0A0P0Y9B3
      Conserved Domains (2) summary
      pfam04578
      Location:648 → 687
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:75 → 422
      DUF4220; Domain of unknown function (DUF4220)

    2. XM_015764971.3 → XP_015620457.1  uncharacterized protein LOC4352055 isoform X1

      UniProtKB/TrEMBL
      A0A0P0Y9B3, Q2QT41
      Conserved Domains (2) summary
      pfam04578
      Location:648 → 700
      DUF594; Protein of unknown function, DUF594
      pfam13968
      Location:76 → 422
      DUF4220; Domain of unknown function (DUF4220)
    Nucleotide Protein
    Heading Accession and Version

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