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    LOC4341839 uncharacterized LOC4341839 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341839, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341839
    Gene description
    uncharacterized LOC4341839
    Locus tag
    OSNPB_060677600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341839 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (29015568..29016418, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (28148874..28149862, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial Neighboring gene geranylgeranyl transferase type-2 subunit alpha 1 Neighboring gene zinc finger CCCH domain-containing protein 45-like Neighboring gene auxin response factor 17-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of NatC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized LOC4341839
    Names
    B1153E06.22
    Os06g0677600
    P0710B08.16
    small nuclear ribonucleoprotein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421708.1 → NP_001408637.1  uncharacterized LOC4341839

      Status: VALIDATED

      Source sequence(s)
      CI301562, CI458554
      UniProtKB/TrEMBL
      A0A0P0X0G1, A2YG64, Q653U6, Q655J3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      29015568..29016418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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