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    LOC4346902 protein STRICTOSIDINE SYNTHASE-LIKE 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346902, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346902
    Gene description
    protein STRICTOSIDINE SYNTHASE-LIKE 10
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (16811841..16818254)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (12454357..12460991)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene uncharacterized LOC136351933 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene uncharacterized LOC136351864 Neighboring gene putative wall-associated receptor kinase-like 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables strictosidine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein STRICTOSIDINE SYNTHASE-LIKE 10
    Names
    P0599F09.21
    putative strictosidine synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      16811841..16818254
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755842.3 → XP_015611328.1  protein STRICTOSIDINE SYNTHASE-LIKE 10

      UniProtKB/TrEMBL
      B7F2K6, B8BEY4, Q6H4H9
      Conserved Domains (2) summary
      cl18310
      Location:56 → 251
      NHL; NHL repeat unit of beta-propeller proteins
      cl22863
      Location:175 → 263
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version

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