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    LOC4332833 E3 ubiquitin-protein ligase SRFP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332833, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332833
    Gene description
    E3 ubiquitin-protein ligase SRFP1-like
    Locus tag
    OSNPB_030348900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 6.9), flower buds (RPKM 5.7) and 4 other tissues See more
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    Genomic context

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    See LOC4332833 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (13151539..13153998, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (13095808..13098317, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene tubby-like F-box protein 6 Neighboring gene lipase Neighboring gene nuclear pore complex protein NUP93A Neighboring gene probable serine/threonine-protein kinase At1g54610

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SRFP1-like
    Names
    Os03g0348900
    putative RING finger and CHY zinc finger domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      13151539..13153998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773379.3 → XP_015628865.1  E3 ubiquitin-protein ligase SRFP1-like

      UniProtKB/Swiss-Prot
      Q10LI1
      UniProtKB/TrEMBL
      A0AA51N377, B8APF9
      Conserved Domains (3) summary
      pfam05495
      Location:18 → 93
      zf-CHY; CHY zinc finger
      pfam14599
      Location:194 → 251
      zinc_ribbon_6; Zinc-ribbon
      cl17238
      Location:146 → 190
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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