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    LOC4345925 probable galactinol--sucrose galactosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345925, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345925
    Gene description
    probable galactinol--sucrose galactosyltransferase 1
    Locus tag
    OSNPB_080495800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4345925 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24615338..24619686)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24475152..24479470)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ domain-containing protein At1g55760 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene heme A synthase COX15 Neighboring gene probable galacturonosyltransferase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel alkaline alpha-galactosidase gene is involved in rice leaf senescence. Lee RH, et al. Plant Mol Biol, 2004 May. PMID 15604681
    2. Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. Lee RH, et al. J Exp Bot, 2001 May. PMID 11432928
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable galactinol--sucrose galactosyltransferase 1
    Names
    B1142B04.25-1
    B1142B04.25-2
    Os08g0495800
    alkaline alpha-galactosidase
    putative alkaline alpha-galactosidase seed imbibition protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24615338..24619686
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792663.3 → XP_015648149.1  probable galactinol--sucrose galactosyltransferase 1

      UniProtKB/TrEMBL
      A0A0N7KQ28, A0A5S6RCY5, A2YWL4, B9G1L1, Q6Z5C2, Q6Z5C3, Q8W2G5
      Conserved Domains (1) summary
      cl07893
      Location:1 → 753
      AmyAc_family; Alpha amylase catalytic domain family
    Nucleotide Protein
    Heading Accession and Version

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