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    LOC4326596 SNF1-related protein kinase regulatory subunit gamma-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326596, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326596
    Gene description
    SNF1-related protein kinase regulatory subunit gamma-1
    Locus tag
    OSNPB_010633400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 19.9), roots after flowering (RPKM 3.3) and 6 other tissues See more
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    Genomic context

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    See LOC4326596 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (25947767..25950431)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25368323..25371063)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein INVOLVED IN DE NOVO 2 Neighboring gene uncharacterized LOC136356950 Neighboring gene dihydroflavonol 4-reductase-like Neighboring gene uncharacterized LOC136354982

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    SNF1-related protein kinase regulatory subunit gamma-1
    Names
    Os01g0633400
    P0663E10.12
    putative YZ1
    putative transcription factor X2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      25947767..25950431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794946.3 → XP_015650432.1  SNF1-related protein kinase regulatory subunit gamma-1

      UniProtKB/TrEMBL
      A0A0P0V5L3, A2WSY1, Q5VNT2
      Conserved Domains (1) summary
      cd02205
      Location:223 → 369
      CBS_pair_SF; Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
    Nucleotide Protein
    Heading Accession and Version

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