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    LOC4324129 small ribosomal subunit protein mS86 (rPPR1) [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324129, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324129
    Gene description
    small ribosomal subunit protein mS86 (rPPR1)
    Locus tag
    OSNPB_010793200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0684C02.2
    Expression
    Ubiquitous expression in flower buds (RPKM 18.4), flowers (RPKM 16.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324129 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34200146..34203448)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33593743..33597075)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene polyphenol oxidase, chloroplastic Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene uncharacterized LOC136355910 Neighboring gene aureusidin synthase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein mS86 (rPPR1)
    Names
    Os01g0793200
    P0557A01.81
    pentatricopeptide repeat-containing protein At1g61870, mitochondrial
    putative drought-inducible protein 1OS

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      34200146..34203448
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780465.3 → XP_015635951.1  small ribosomal subunit protein mS86 (rPPR1)

      UniProtKB/TrEMBL
      A0A0P0V983, A0A979HK84, Q7F4S8, Q8RUB8
      Conserved Domains (2) summary
      PLN03218
      Location:141 → 371
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:241 → 268
      PPR; PPR repeat [structural motif]

    2. XM_015780543.3 → XP_015636029.1  small ribosomal subunit protein mS86 (rPPR1)

      UniProtKB/TrEMBL
      A0A0P0V983, A0A979HK84, Q7F4S8, Q8RUB8
      Conserved Domains (2) summary
      PLN03218
      Location:141 → 371
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:241 → 268
      PPR; PPR repeat [structural motif]

    RNA

    1. XR_003239565.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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