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    LOC4338807 thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338807, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338807
    Gene description
    thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic
    Locus tag
    OSNPB_050417200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MRL7L; OsMRL7-L; OsJ_18562; P0579A05.3
    Expression
    Broad expression in leaves before flowering (RPKM 87.6), roots after flowering (RPKM 56.7) and 5 other tissues See more
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    Genomic context

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    See LOC4338807 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (20541818..20543792)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20438338..20440321)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene LOB domain-containing protein 6 Neighboring gene protease Do-like 10, mitochondrial Neighboring gene RPA-interacting protein A Neighboring gene uncharacterized LOC9268643

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic
    Names
    LOC_Os05g34470
    OSJNBa0084P24.17
    Os05g0417200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420511.1 → NP_001407440.1  thioredoxin-like fold domain-containing protein MRL7L homolog, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK071955, AP014961
      UniProtKB/Swiss-Prot
      Q0DI48, Q688K6, Q6AT71
      UniProtKB/TrEMBL
      A2Y4Q4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      20541818..20543792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DI48.1 GenPept UniProtKB/Swiss-Prot:Q0DI48

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