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    LOC4342990 probable DNA primase large subunit [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342990, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4342990
    Gene description
    probable DNA primase large subunit
    Locus tag
    OSNPB_070406800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1723_B06.102-1; OJ1723_B06.102-2
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    Genomic context

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    See LOC4342990 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (12729249..12734544, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (12574363..12579732, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene glucose-6-phosphate 1-dehydrogenase 2, chloroplastic Neighboring gene uncharacterized LOC136351221 Neighboring gene phospholipase SGR2-like Neighboring gene uncharacterized LOC136357528 Neighboring gene uncharacterized LOC136357529 Neighboring gene uncharacterized LOC136357530

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication, synthesis of primer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of alpha DNA polymerase:primase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable DNA primase large subunit
    Names
    Os07g0406800
    P0613B07.147-1
    P0613B07.147-2
    putative DNA primase large subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      12729249..12734544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026027302.2 → XP_025883087.1  probable DNA primase large subunit

      UniProtKB/TrEMBL
      B8B5A0, B9FWR7, Q69PX2, Q69Q69
      Conserved Domains (1) summary
      cd07322
      Location:29 → 446
      PriL_PriS_Eukaryotic; Eukaryotic core primase: Large subunit, PriL

    2. XM_066312755.1 → XP_066168852.1  probable DNA primase large subunit

      UniProtKB/TrEMBL
      B8B5A0, B9FWR7, Q69PX2, Q69Q69

    3. XM_015789938.3 → XP_015645424.1  probable DNA primase large subunit

      UniProtKB/TrEMBL
      B8B5A0, B9FWR7, Q69PX2, Q69Q69
      Conserved Domains (1) summary
      cd07322
      Location:29 → 446
      PriL_PriS_Eukaryotic; Eukaryotic core primase: Large subunit, PriL

    RNA

    1. XR_010742793.1 RNA Sequence

    2. XR_010742792.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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