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    LOC4327515 amino acid transporter AVT6C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327515, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327515
    Gene description
    amino acid transporter AVT6C
    Locus tag
    OSNPB_010825800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 5.8), flowers (RPKM 5.2) and 4 other tissues See more
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    Genomic context

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    See LOC4327515 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (35945839..35952048, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35320809..35327175, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene EP1-like glycoprotein 3 Neighboring gene TOM1-like protein 6 Neighboring gene uncharacterized LOC112937451 Neighboring gene uncharacterized LOC4327516 Neighboring gene copper transport protein ATX1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid transporter AVT6C; uncharacterized protein LOC4327515
    Names
    Os01g0825800
    P0439E11.18-1
    P0439E11.18-2
    amino acid transporter-like protein
    putative N system amino acids transporter NAT-1
    sodium-coupled neutral amino acid transporter 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      35945839..35952048 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022201.2 → XP_025877986.1  amino acid transporter AVT6C isoform X4

      UniProtKB/TrEMBL
      B8ABL9
      Conserved Domains (1) summary
      cl00456
      Location:31 → 401
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_015771153.3 → XP_015626639.1  amino acid transporter AVT6C isoform X3

      UniProtKB/TrEMBL
      A0A0P0VA03, A0A5S6R6I5, A0A9K3Y879, B8ABL9, Q0JI42, Q5QMB0
      Conserved Domains (1) summary
      cl00456
      Location:31 → 402
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_066305041.1 → XP_066161138.1  uncharacterized protein LOC4327515 isoform X1

    4. XM_015771077.3 → XP_015626563.1  amino acid transporter AVT6C isoform X2

      UniProtKB/TrEMBL
      B9EU85
      Conserved Domains (2) summary
      COG0814
      Location:41 → 449
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:41 → 405
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

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