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    LOC4325331 uncharacterized LOC4325331 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325331, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325331
    Gene description
    uncharacterized LOC4325331
    Locus tag
    OSNPB_010182832
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0489A01.6
    Expression
    Ubiquitous expression in flowers (RPKM 11.4), leaves before flowering (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4325331 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (4384904..4404171)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (4374120..4393393)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable WRKY transcription factor 13 Neighboring gene uncharacterized LOC136354209 Neighboring gene probable choline kinase 1 Neighboring gene probable U3 small nucleolar RNA-associated protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325331
    Names
    Os01g0182832
    Os01g0182900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      4384904..4404171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794534.3 → XP_015650020.1  uncharacterized protein LOC4325331 isoform X1

      UniProtKB/TrEMBL
      B8ADL6
      Conserved Domains (1) summary
      pfam14649
      Location:2709 → 3002
      Spatacsin_C; Spatacsin C-terminus

    2. XM_015794552.3 → XP_015650038.1  uncharacterized protein LOC4325331 isoform X2

      UniProtKB/TrEMBL
      B8ADL6
      Conserved Domains (1) summary
      pfam14649
      Location:2708 → 3001
      Spatacsin_C; Spatacsin C-terminus

    3. XM_015794559.3 → XP_015650045.1  uncharacterized protein LOC4325331 isoform X3

      UniProtKB/TrEMBL
      B8ADL6
      Conserved Domains (1) summary
      pfam14649
      Location:2706 → 2999
      Spatacsin_C; Spatacsin C-terminus

    4. XM_015794566.3 → XP_015650052.1  uncharacterized protein LOC4325331 isoform X4

      UniProtKB/TrEMBL
      B8ADL6
      Conserved Domains (1) summary
      pfam14649
      Location:2705 → 2998
      Spatacsin_C; Spatacsin C-terminus

    5. XM_015794543.3 → XP_015650029.1  uncharacterized protein LOC4325331 isoform X1

      UniProtKB/TrEMBL
      B8ADL6
      Conserved Domains (1) summary
      pfam14649
      Location:2709 → 3002
      Spatacsin_C; Spatacsin C-terminus
    Nucleotide Protein
    Heading Accession and Version

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