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    LOC4326208 ADP-ribosylation factor 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326208, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326208
    Gene description
    ADP-ribosylation factor 2-like
    Locus tag
    OSNPB_010265100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARF
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    Genomic context

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    See LOC4326208 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9032745..9036946, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9019847..9024158, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SPF27 homolog Neighboring gene uncharacterized LOC4326207 Neighboring gene thylakoid ADP,ATP carrier protein, chloroplastic Neighboring gene protein MAIN-LIKE 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ADP-ribosylation factor 2-like
    Names
    Os01g0265100
    P0453A06.31
    P0499C11.13
    putative ADP-ribosylation factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9032745..9036946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305316.1 → XP_066161413.1  ADP-ribosylation factor 2-like isoform X1

    2. XM_015755827.3 → XP_015611313.1  ADP-ribosylation factor 2-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0V1B9, Q67G16, Q9LDC9
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional

    3. XM_015755834.3 → XP_015611320.1  ADP-ribosylation factor 2-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0V1B9, Q67G16, Q9LDC9
      Conserved Domains (1) summary
      PLN00223
      Location:1 → 181
      PLN00223; ADP-ribosylation factor; Provisional
    Nucleotide Protein
    Heading Accession and Version

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