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    LOC4346058 protein ROLLING AND ERECT LEAF 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346058, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346058
    Gene description
    protein ROLLING AND ERECT LEAF 2-like
    Locus tag
    OSNPB_080519700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 7.1), flower buds (RPKM 6.2) and 6 other tissues See more
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    Genomic context

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    See LOC4346058 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25975325..25981014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25828903..25834769)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene spindle pole body component 110 Neighboring gene uncharacterized LOC4346057 Neighboring gene pumilio homolog 5 Neighboring gene exocyst complex component EXO70I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein ROLLING AND ERECT LEAF 2-like
    Names
    Os08g0519700
    Os08g0519750

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25975325..25981014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795197.3 → XP_015650683.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein

    2. XM_015795200.3 → XP_015650686.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein

    3. XM_015795198.3 → XP_015650684.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein

    4. XM_015795201.3 → XP_015650687.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein

    5. XM_015795199.3 → XP_015650685.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein

    6. XM_015795202.3 → XP_015650688.1  protein ROLLING AND ERECT LEAF 2-like

      Conserved Domains (3) summary
      pfam04782
      Location:388 → 713
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:1 → 59
      DUF630; Protein of unknown function (DUF630)
      pfam14179
      Location:149 → 227
      YppG; YppG-like protein
    Nucleotide Protein
    Heading Accession and Version

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