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    LOC4351872 uncharacterized LOC4351872 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351872, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351872
    Gene description
    uncharacterized LOC4351872
    Locus tag
    OSNPB_120242900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 2.8), flowers (RPKM 2.0) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (7961538..7966627, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (7921620..7926776, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene 3-oxoacyl-[acyl-carrier-protein] reductase 4 Neighboring gene TLC domain-containing protein At5g14285 Neighboring gene uncharacterized LOC136351239 Neighboring gene uncharacterized LOC136354512

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of alpha DNA polymerase:primase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351872
    Names
    DNA polymerase alpha subunit B
    Os12g0242900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      7961538..7966627 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763490.3 → XP_015618976.1  uncharacterized protein LOC4351872

      UniProtKB/TrEMBL
      B9GCK2
      Conserved Domains (2) summary
      COG5214
      Location:214 → 609
      POL12; DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
      pfam08418
      Location:25 → 161
      Pol_alpha_B_N; DNA polymerase alpha subunit B N-terminal
    Nucleotide Protein
    Heading Accession and Version

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