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    LOC4344347 rhodanese-like/PpiC domain-containing protein 12, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344347, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344347
    Gene description
    rhodanese-like/PpiC domain-containing protein 12, chloroplastic
    Locus tag
    OSNPB_070687500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_E04.123
    Expression
    Broad expression in leaves before flowering (RPKM 70.4), leaves after flowering (RPKM 60.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29443379..29446572)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29209548..29212681)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene calmodulin Neighboring gene SNF1-related protein kinase regulatory subunit beta-1 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene transcription factor TGA2.1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhodanese-like/PpiC domain-containing protein 12, chloroplastic
    Names
    Os07g0687500
    peptidyl-prolyl cis-trans isomerase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423015.1 → NP_001409944.1  rhodanese-like/PpiC domain-containing protein 12, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK073511, CI032005, CI440615
      UniProtKB/TrEMBL
      A0A0N7KP34, A2YQ40, Q69WA8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29443379..29446572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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