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    LOC4349156 2-oxoglutarate-Fe(II) type oxidoreductase hxnY [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349156, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4349156
    Gene description
    2-oxoglutarate-Fe(II) type oxidoreductase hxnY
    Locus tag
    OSNPB_100523100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 27.4), leaves after flowering (RPKM 19.4) and 6 other tissues See more
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    Genomic context

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    See LOC4349156 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (20295307..20299478)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-Fe(II) type oxidoreductase hxnY-like Neighboring gene probable serine/threonine-protein kinase At1g54610 Neighboring gene protein DETOXIFICATION 49-like Neighboring gene arogenate dehydratase/prephenate dehydratase 6, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    2-oxoglutarate-Fe(II) type oxidoreductase hxnY
    Names
    Os10g0523100
    UPF0676 protein C1494.01

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      20295307..20299478
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026020958.1 → XP_025876743.1  2-oxoglutarate-Fe(II) type oxidoreductase hxnY isoform X1

      UniProtKB/TrEMBL
      A2Z9H0
      Conserved Domains (1) summary
      cl26046
      Location:13 → 322
      PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]

    2. XM_026020957.1 → XP_025876742.1  2-oxoglutarate-Fe(II) type oxidoreductase hxnY isoform X1

      UniProtKB/TrEMBL
      A2Z9H0
      Conserved Domains (1) summary
      cl26046
      Location:13 → 322
      PcbC; Isopenicillin N synthase and related dioxygenases [Secondary metabolites biosynthesis, transport and catabolism]

    3. XM_015757377.2 → XP_015612863.1  2-oxoglutarate-Fe(II) type oxidoreductase hxnY isoform X2

      UniProtKB/TrEMBL
      A0A0P0XWP8, A0A5S6RAR7, A2Z9H0, Q0IW99, Q8H0A8
      Conserved Domains (1) summary
      PLN03002
      Location:13 → 315
      PLN03002; oxidoreductase, 2OG-Fe(II) oxygenase family protein
    Nucleotide Protein
    Heading Accession and Version

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