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    LOC4345792 IAA-alanine resistance protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345792, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345792
    Gene description
    IAA-alanine resistance protein 1
    Locus tag
    OSNPB_080467400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 17.5), roots before flowering (RPKM 14.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345792 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (23126616..23134506, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (22987094..22994961, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107282013 Neighboring gene putative clathrin assembly protein At1g25240 Neighboring gene protein HVA22 Neighboring gene STOREKEEPER protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular zinc ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in zinc ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IAA-alanine resistance protein 1
    Names
    Os08g0467400
    P0104B02.41
    P0470B03.12
    putative IAA-alanine resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      23126616..23134506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795205.2 → XP_015650691.1  IAA-alanine resistance protein 1

      UniProtKB/TrEMBL
      B9G1C1, Q6YSC5, Q6ZC45
      Conserved Domains (1) summary
      pfam02535
      Location:128 → 494
      Zip; ZIP Zinc transporter

    RNA

    1. XR_001548396.3 RNA Sequence

    2. XR_001548394.3 RNA Sequence

    3. XR_001548395.3 RNA Sequence

    4. XR_001548393.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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