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    LOC4340316 uncharacterized LOC4340316 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340316, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4340316
    Gene description
    uncharacterized LOC4340316
    Locus tag
    OSNPB_060182400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340316 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4251439..4255677)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4087899..4092184)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene deSI-like protein At4g17486 Neighboring gene callose synthase 5 Neighboring gene protein DA1-related 1 Neighboring gene two-component response regulator ORR22-like Neighboring gene probable histidine kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4340316
    Names
    Diadenosine tetraphosphatase and related serine/threonine protein phosphatases-like
    OSJNBb0036B04.4
    OSJNBb0036B04.5
    Os06g0182400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      4251439..4255677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788416.2 → XP_015643902.2  uncharacterized protein LOC4340316 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WTM3, Q5SMM1

    2. XM_026026564.2 → XP_025882349.1  uncharacterized protein LOC4340316 isoform X2

      Conserved Domains (1) summary
      cd07397
      Location:1 → 216
      MPP_NostocDevT-like; Nostoc DevT and similar proteins, metallophosphatase domain

    3. XM_066311252.1 → XP_066167349.1  uncharacterized protein LOC4340316 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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    Research Materials