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    LOC4331329 uncharacterized LOC4331329 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331329, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331329
    Gene description
    uncharacterized LOC4331329
    Locus tag
    OSNPB_030107400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 16.4), roots before flowering (RPKM 13.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331329 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (447691..454947)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (440255..447592)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene plasma membrane ATPase 4-like Neighboring gene silicon efflux transporter LSI2-like Neighboring gene uncharacterized LOC136355803 Neighboring gene uncharacterized LOC4331330 Neighboring gene UPF0548 protein At2g17695

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331329
    Names
    Os03g0107400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      447691..454947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776105.3 → XP_015631591.1  uncharacterized protein LOC4331329

      UniProtKB/TrEMBL
      A2XBK0, Q10SY8, Q8H7Q9
      Conserved Domains (3) summary
      PRK02224
      Location:305 → 643
      PRK02224; DNA double-strand break repair Rad50 ATPase
      COG1196
      Location:560 → 1283
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam10358
      Location:29 → 141
      NT-C2; N-terminal C2 in EEIG1 and EHBP1 proteins
    Nucleotide Protein
    Heading Accession and Version

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