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    LOC4352516 cytochrome c oxidase subunit 5C-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352516, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4352516
    Gene description
    cytochrome c oxidase subunit 5C-like
    Locus tag
    OSNPB_120561000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    COX5c; OsJ_36508
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    Genomic context

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    See LOC4352516 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (23658299..23661244, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (22969387..22972386, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor MCM7-like Neighboring gene ocs element-binding factor 1 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene serine/arginine repetitive matrix protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of cDNA encoding cytochrome c oxidase subunit 5c (COX5c) from rice: comparison of its expression with nuclear-encoded and mitochondrial-encoded COX genes. Hamanaka S, et al. Genes Genet Syst, 1999 Jun. PMID 10586516

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cytochrome c oxidase subunit 5C
    Names
    Cytochrome c oxidase polypeptide Vc
    LOC_Os12g37419

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423571.1 → NP_001410500.1  cytochrome c oxidase subunit 5C

      Status: VALIDATED

      Source sequence(s)
      AU164493, CF327541, CF337199, CI237021
      UniProtKB/Swiss-Prot
      A3CIF7, Q0IMM5, Q9SXX7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      23658299..23661244 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SXX7.3 GenPept UniProtKB/Swiss-Prot:Q9SXX7

    Gene LinkOut

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