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    LOC4327838 protein ULTRAPETALA 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327838, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327838
    Gene description
    protein ULTRAPETALA 1
    Locus tag
    OSNPB_010780800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 9.1), flower buds (RPKM 5.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (33679386..33684706, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (33073501..33078963, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 Neighboring gene secretory carrier-associated membrane protein 2-like Neighboring gene BTB/POZ domain-containing protein At5g03250 Neighboring gene vacuolar protein sorting-associated protein 28 homolog 1 Neighboring gene putative disease resistance RPP13-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Rice Trithorax factor ULTRAPETALA 1 (OsULT1) specifically binds to "GAGAG" sequence motif present in Polycomb response elements. Roy D, et al. Biochim Biophys Acta Gene Regul Mech, 2019 May. PMID 30753903
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. cold stress leads to increased occupancy of ULT1 protein at the promoter region of OsDREB1b transcription factor.
      Title: Rice Trithorax factor ULTRAPETALA 1 (OsULT1) specifically binds to "GAGAG" sequence motif present in Polycomb response elements.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ULTRAPETALA 1
    Names
    B1100D10.3-1
    Os01g0780800
    P0010B10.33-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      33679386..33684706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765911.3 → XP_015621397.1  protein ULTRAPETALA 1

      UniProtKB/TrEMBL
      B8AAF4, B9ETC5, Q5ZAW0, Q5ZCF8
    Nucleotide Protein
    Heading Accession and Version

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