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    LOC4338469 uncharacterized LOC4338469 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338469, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338469
    Gene description
    uncharacterized LOC4338469
    Locus tag
    OSNPB_050341600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 10.8), roots after flowering (RPKM 10.0) and 6 other tissues See more
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    Genomic context

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    See LOC4338469 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (16109733..16114123, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16019205..16023765, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein neprosin Neighboring gene guanine nucleotide-binding protein alpha-1 subunit Neighboring gene uncharacterized LOC107280957 Neighboring gene uncharacterized LOC107276192 Neighboring gene senescence associated gene 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Rab protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338469
    Names
    Os05g0341600
    ras-related protein Rab-21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      16109733..16114123 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782254.3 → XP_015637740.1  uncharacterized protein LOC4338469

      UniProtKB/TrEMBL
      A0A0P0WL46, A2Y3D4, Q0DJ12, Q5WMU2
      Conserved Domains (2) summary
      cd04123
      Location:15 → 176
      Rab21; Rab GTPase family 21 (Rab21)
      pfam00071
      Location:16 → 177
      Ras; Ras family
    Nucleotide Protein
    Heading Accession and Version

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