LOC4341465 SPX domain-containing protein 1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341465
Gene description: SPX domain-containing protein 1-like
Locus tag: OSNPB_060603600
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SPX1; OsSPX1; OsJ_21901
Expression: Ubiquitous expression in roots before flowering (RPKM 44.3), leaves after flowering (RPKM 24.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	6	NC_089040.1 (24727206..24731754, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (23875408..23879989, complement)

Chromosome 6 - NC_089040.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure.
Title: Mechanism of phosphate sensing and signaling revealed by rice SPX1-PHR2 complex structure.
SPX1 role in male sterility, pollen development and grain yield
Title: Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in cellular response to phosphate starvation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: SPX domain-containing protein 1

Names: LOC_Os06g40120; P0486H12.37; Protein SPX DOMAIN GENE 1; putative ids-4 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.