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    LOC4330140 magnesium/proton exchanger 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330140, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330140
    Gene description
    magnesium/proton exchanger 2-like
    Locus tag
    OSNPB_020644900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MHX2; OJ1282_H11.33
    Expression
    Ubiquitous expression in roots before flowering (RPKM 4.3), flowers (RPKM 1.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26442419..26446535, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25956113..25960219, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g26790, mitochondrial Neighboring gene palmitoyl-acyl carrier protein thioesterase, chloroplastic-like Neighboring gene RING-H2 finger protein ATL74 Neighboring gene kinesin-like protein KIN-7C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in metal ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    magnesium/proton exchanger 2
    Names
    LOC_Os02g43110
    Mg(2+)/H(+) exchanger 2
    P0030D07.11
    Zinc/proton exchanger 2
    Zn(2+)/H(+) exchanger 2
    putative magnesium/proton exchanger

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      26442419..26446535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768748.3 → XP_015624234.1  magnesium/proton exchanger 2

      UniProtKB/Swiss-Prot
      Q0DZ55, Q6H641
      Conserved Domains (1) summary
      pfam01699
      Location:351 → 517
      Na_Ca_ex; Sodium/calcium exchanger protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H641.2 GenPept UniProtKB/Swiss-Prot:Q6H641

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