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    LOC4340750 putative U-box domain-containing protein 42 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340750, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4340750
    Gene description
    putative U-box domain-containing protein 42
    Locus tag
    OSNPB_060275700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4340750 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (9544218..9549000, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (9368162..9373118, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase CLF-like Neighboring gene transcription factor bHLH49 Neighboring gene amino acid transporter AVT6A Neighboring gene uncharacterized LOC4340752

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative U-box domain-containing protein 42
    Names
    Os06g0275700
    P0038C05.32
    armadillo/beta-catenin repeat protein-related-like
    putative armadillo/beta-catenin repeat family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      9544218..9549000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311546.1 → XP_066167643.1  putative U-box domain-containing protein 42 isoform X2

    2. XM_015788043.3 → XP_015643529.1  putative U-box domain-containing protein 42 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WV73
      Conserved Domains (2) summary
      smart00504
      Location:218 → 286
      Ubox; Modified RING finger domain
      sd00044
      Location:459 → 491
      HEAT; HEAT repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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