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    LOC4332324 partner of Y14 and mago [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332324, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332324
    Gene description
    partner of Y14 and mago
    Locus tag
    OSNPB_030262100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 12.1), flower buds (RPKM 11.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8618638..8622080)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8568430..8572043)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-phosphate 5-kinase 1 Neighboring gene uncharacterized LOC136355857 Neighboring gene mitogen-activated protein kinase kinase kinase 1 Neighboring gene uncharacterized LOC4332326

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exon-exon junction complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    partner of Y14 and mago
    Names
    Os03g0262100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      8618638..8622080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309026.1 → XP_066165123.1  partner of Y14 and mago isoform X3

    2. XM_015772745.3 → XP_015628231.1  partner of Y14 and mago isoform X1

      UniProtKB/TrEMBL
      A0A8J8YG24, B8AKC2, B9F756, Q0DT99, Q10NR2
      Conserved Domains (1) summary
      pfam09282
      Location:24 → 50
      Mago-bind; Mago binding

    3. XM_066309027.1 → XP_066165124.1  partner of Y14 and mago isoform X4

    4. XM_015772746.3 → XP_015628232.1  partner of Y14 and mago isoform X2

      UniProtKB/TrEMBL
      Q84QA2
      Conserved Domains (1) summary
      pfam09282
      Location:24 → 50
      Mago-bind; Mago binding
    Nucleotide Protein
    Heading Accession and Version

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