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    LOC4331110 F-box protein PP2-B10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331110, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331110
    Gene description
    F-box protein PP2-B10
    Locus tag
    OSNPB_020813350
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1293_E04.3
    Expression
    Ubiquitous expression in flower buds (RPKM 92.5), flowers (RPKM 83.8) and 6 other tissues See more
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    Genomic context

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    See LOC4331110 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (35332204..35334384)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34833853..34836033)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9271936 Neighboring gene uncharacterized LOC136355442 Neighboring gene uncharacterized LOC4331109 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene glutathione reductase, cytosolic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein PP2-B10
    Names
    F-box domain-containing protein
    F-box family protein-like
    OSJNBa0053L11.25
    Os02g0813350

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      35332204..35334384
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767560.3 → XP_015623046.1  F-box protein PP2-B10

      UniProtKB/TrEMBL
      A0A0P0VR96, A2XAX4, Q0DWJ0, Q6K3E9
      Conserved Domains (2) summary
      pfam12937
      Location:11 → 51
      F-box-like
      pfam14299
      Location:103 → 292
      PP2; Phloem protein 2
    Nucleotide Protein
    Heading Accession and Version

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