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    LOC4327685 trafficking protein particle complex subunit 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327685, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4327685
    Gene description
    trafficking protein particle complex subunit 5
    Locus tag
    OSNPB_010708600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0456F08.1; SPP30-like
    Expression
    Ubiquitous expression in flower buds (RPKM 34.8), roots after flowering (RPKM 31.3) and 6 other tissues See more
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    Genomic context

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    See LOC4327685 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29442645..29447122)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene casein kinase 1-like protein 2 Neighboring gene probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL1 Neighboring gene protein IQ-DOMAIN 1 Neighboring gene mitochondrial carrier protein CoAc1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of TRAPPI protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of TRAPPIII protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 5
    Names
    Os01g0708600
    P0510F09.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406412.1 → NP_001393341.1  trafficking protein particle complex subunit 5

      Status: VALIDATED

      Source sequence(s)
      AK111377, AP014957, CI652718
      UniProtKB/TrEMBL
      A0A0P0V763, B8A8C6, Q5N9C8, Q5NAJ2

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29442645..29447122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756182.2 → XP_015611668.1  trafficking protein particle complex subunit 5

      UniProtKB/TrEMBL
      Q5N9C8
      Conserved Domains (1) summary
      cd14943
      Location:25 → 182
      TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
    Nucleotide Protein
    Heading Accession and Version

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