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    LOC4325196 protein LATERAL ORGAN BOUNDARIES [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325196, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325196
    Gene description
    protein LATERAL ORGAN BOUNDARIES
    Locus tag
    OSNPB_010169400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CRLL4; OJ1276_B06.29
    Expression
    Biased expression in flowers (RPKM 2.3), flower buds (RPKM 1.3) and 3 other tissues See more
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    Genomic context

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    See LOC4325196 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (3559820..3566778, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (3549722..3559601, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354973 Neighboring gene transcription factor MYB61 Neighboring gene protein RST1 Neighboring gene tryptophan aminotransferase-related protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling. Inukai Y, et al. Plant Cell, 2005 May. PMID 15829602, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein LATERAL ORGAN BOUNDARIES
    Names
    LOB domain protein
    Os01g0169400
    P0028E10.30
    putative LOB domain protein 25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      3559820..3566778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023062.2 → XP_025878847.1  protein LATERAL ORGAN BOUNDARIES

      UniProtKB/TrEMBL
      A0A9K3Y6W5, A0AA97PYM4, B2KKZ3, Q0JQD1, Q7F3T2, Q9AS62
      Conserved Domains (1) summary
      pfam03195
      Location:30 → 128
      LOB; Lateral organ boundaries (LOB) domain

    2. XM_066311997.1 → XP_066168094.1  protein LATERAL ORGAN BOUNDARIES

      UniProtKB/TrEMBL
      A0A9K3Y6W5, A0AA97PYM4, Q0JQD1, Q7F3T2, Q9AS62

    3. XM_015792520.3 → XP_015648006.1  protein LATERAL ORGAN BOUNDARIES

      UniProtKB/TrEMBL
      A0A9K3Y6W5, A0AA97PYM4, B2KKZ3, Q0JQD1, Q7F3T2, Q9AS62
      Conserved Domains (1) summary
      pfam03195
      Location:30 → 128
      LOB; Lateral organ boundaries (LOB) domain

    4. XM_066311999.1 → XP_066168096.1  protein LATERAL ORGAN BOUNDARIES

      UniProtKB/TrEMBL
      A0A9K3Y6W5, A0AA97PYM4, Q0JQD1, Q7F3T2, Q9AS62

    5. XM_066311996.1 → XP_066168093.1  protein LATERAL ORGAN BOUNDARIES

      UniProtKB/TrEMBL
      A0A9K3Y6W5, A0AA97PYM4, Q0JQD1, Q7F3T2, Q9AS62
    Nucleotide Protein
    Heading Accession and Version

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