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    LOC4345288 protein EMSY-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345288, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345288
    Gene description
    protein EMSY-LIKE 3
    Locus tag
    OSNPB_080328300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 23.2), leaves after flowering (RPKM 19.4) and 6 other tissues See more
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    Genomic context

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    See LOC4345288 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14543608..14549864)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14475910..14482166)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene 11 kDa late embryogenesis abundant protein Neighboring gene putative FBD-associated F-box protein At5g56820 Neighboring gene uncharacterized LOC136351431

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EMSY-LIKE 3
    Names
    OSJNBa0049I01.19
    Os08g0328300
    P0670E08.30

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14543608..14549864
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795587.3 → XP_015651073.1  protein EMSY-LIKE 3 isoform X1

      UniProtKB/TrEMBL
      A3BRY9
      Conserved Domains (2) summary
      pfam03735
      Location:55 → 120
      ENT; ENT domain
      cl02573
      Location:245 → 285
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...

    2. XM_015795588.3 → XP_015651074.1  protein EMSY-LIKE 3 isoform X2

      UniProtKB/TrEMBL
      A0A0N7KPN6, A3BRY9, B8B9W1, Q6Z0H6
      Conserved Domains (3) summary
      PRK14971
      Location:143 → 228
      PRK14971; DNA polymerase III subunit gamma/tau
      pfam03735
      Location:55 → 120
      ENT; ENT domain
      cd20404
      Location:245 → 302
      Tudor_Agenet_AtEML-like; Tudor-like Agenet domain found in Arabidopsis thaliana proteins EMSY-LIKE 1-4 (AtEML1-4) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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