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    LOC4332195 purple acid phosphatase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332195, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332195
    Gene description
    purple acid phosphatase 3
    Locus tag
    OSNPB_030238600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4332195 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7370987..7373900)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7322335..7325361)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938300 Neighboring gene uncharacterized LOC9267393 Neighboring gene type IV inositol polyphosphate 5-phosphatase 9 Neighboring gene uncharacterized LOC4332196 Neighboring gene RNA demethylase ALKBH10B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferric iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    purple acid phosphatase 3
    Names
    Os03g0238600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7370987..7373900
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775309.3 → XP_015630795.1  purple acid phosphatase 3

      UniProtKB/TrEMBL
      A2XEC8, A3AFX1, Q10PD0
      Conserved Domains (1) summary
      cd07378
      Location:44 → 316
      MPP_ACP5; Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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