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    LOC4349274 NEP1-interacting protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349274, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4349274
    Gene description
    NEP1-interacting protein 1
    Locus tag
    OSNPB_100544600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349274 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (21963922..21967357)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21271387..21275026)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene uncharacterized LOC4349273 Neighboring gene probable protein phosphatase 2C 72 Neighboring gene putative magnesium transporter MRS2-G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    NEP1-interacting protein 1
    Names
    Os10g0544600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      21963922..21967357
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757430.3 → XP_015612916.1  NEP1-interacting protein 1

      UniProtKB/TrEMBL
      A0A0P0XX41, B8BI32, Q7XCJ8, Q9AV43
      Conserved Domains (1) summary
      cd16454
      Location:187 → 230
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family
    Nucleotide Protein
    Heading Accession and Version

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