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    LOC4324556 cationic peroxidase SPC4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324556, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324556
    Gene description
    cationic peroxidase SPC4
    Locus tag
    OSNPB_010963000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prx22
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    Genomic context

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    See LOC4324556 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43093803..43095112)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42441642..42442946)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cationic peroxidase SPC4 Neighboring gene cationic peroxidase SPC4 Neighboring gene cationic peroxidase SPC4 Neighboring gene syntaxin-61

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type cell wall IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasmodesma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic peroxidase SPC4
    Names
    Os01g0963000
    P0483G10.32
    class III peroxidase 22
    putative peroxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43093803..43095112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765438.3 → XP_015620924.1  cationic peroxidase SPC4

      UniProtKB/TrEMBL
      A0A0N7KEG5, A0A482DUT2, A2WZD9, Q0JFT1, Q94DM2
      Conserved Domains (1) summary
      cd00693
      Location:35 → 330
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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