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    LOC4341424 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341424, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341424
    Gene description
    3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
    Locus tag
    OSNPB_060594100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341424 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24195505..24202394)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23343917..23350822)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cyanidin 3-O-rutinoside 5-O-glucosyltransferase Neighboring gene crocetin glucosyltransferase, chloroplastic Neighboring gene uncharacterized LOC136357115 Neighboring gene putative disease resistance protein At3g14460

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-hydroxyisobutyryl-CoA hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in valine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
    Names
    Os06g0594100
    P0502H06.44-1
    P0652A05.9-1
    putative 3-hydroxyisobutyryl-coenzyme A hydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      24195505..24202394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311888.1 → XP_066167985.1  3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X4

    2. XM_015788469.3 → XP_015643955.1  3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8B475, Q0DB81, Q69UF2
      Conserved Domains (1) summary
      pfam16113
      Location:74 → 421
      ECH_2; Enoyl-CoA hydratase/isomerase

    3. XM_026026310.2 → XP_025882095.1  3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X5

      UniProtKB/TrEMBL
      B8B475
      Conserved Domains (1) summary
      pfam16113
      Location:74 → 432
      ECH_2; Enoyl-CoA hydratase/isomerase

    4. XM_015788470.3 → XP_015643956.1  3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8B475
      Conserved Domains (1) summary
      pfam16113
      Location:74 → 417
      ECH_2; Enoyl-CoA hydratase/isomerase

    5. XM_026026308.2 → XP_025882093.1  3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X3

      Conserved Domains (1) summary
      pfam16113
      Location:26 → 300
      ECH_2; Enoyl-CoA hydratase/isomerase
    Nucleotide Protein
    Heading Accession and Version

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