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    LOC4325932 glycine dehydrogenase (decarboxylating), mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325932, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325932
    Gene description
    glycine dehydrogenase (decarboxylating), mitochondrial
    Locus tag
    OSNPB_010711400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 394.8), leaves before flowering (RPKM 253.9) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30148662..30154946)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29560209..29566768)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable mitochondrial-processing peptidase subunit beta, mitochondrial Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g68400 Neighboring gene calcineurin B-like protein 10 Neighboring gene protein REVERSION-TO-ETHYLENE SENSITIVITY1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycine dehydrogenase (decarboxylating) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycine decarboxylation via glycine cleavage system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of glycine cleavage complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine dehydrogenase (decarboxylating), mitochondrial
    Names
    B1142C05.6-1
    B1142C05.6-2
    B1142C05.6-3
    Os01g0711400
    P protein-like
    P0456F08.31-1
    P0456F08.31-2
    P0456F08.31-3
    glycine dehydrogenase P protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30148662..30154946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758006.3 → XP_015613492.1  glycine dehydrogenase (decarboxylating), mitochondrial

      UniProtKB/TrEMBL
      A2WUC5, Q0JJW8, Q6V9T1
      Conserved Domains (1) summary
      PLN02414
      Location:37 → 1024
      PLN02414; glycine dehydrogenase (decarboxylating)
    Nucleotide Protein
    Heading Accession and Version

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