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    LOC4328560 GDSL esterase/lipase At2g04570 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328560, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328560
    Gene description
    GDSL esterase/lipase At2g04570
    Locus tag
    OSNPB_020189200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1145_F01.26
    Expression
    Biased expression in roots before flowering (RPKM 3.2), flowers (RPKM 0.3) and 2 other tissues See more
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    Genomic context

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    See LOC4328560 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4952173..4953819)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4942610..4944310)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein bS21c Neighboring gene mediator of RNA polymerase II transcription subunit 11 Neighboring gene GDSL esterase/lipase At4g26790 Neighboring gene RPM1-interacting protein 4 Neighboring gene uncharacterized LOC136355177

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase At2g04570
    Names
    OSJNBb0031B09.5
    Os02g0189200
    putative Anter-specific proline-rich protein APG

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4952173..4953819
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768633.3 → XP_015624119.1  GDSL esterase/lipase At2g04570

      UniProtKB/TrEMBL
      A0A0P0VFS3, A3A3Z2, Q6YUV2
      Conserved Domains (1) summary
      cl01053
      Location:34 → 377
      SGNH_hydrolase; or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical ...
    Nucleotide Protein
    Heading Accession and Version

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