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    LOC4349705 protein ZINC INDUCED FACILITATOR-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349705, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349705
    Gene description
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Locus tag
    OSNPB_110135000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349705 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (1671334..1676240, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (1626484..1631411, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene metacaspase-9 Neighboring gene protein ZINC INDUCED FACILITATOR 1 Neighboring gene uncharacterized LOC136354092 Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Phytosiderophore Efflux Transporter TOM2 Is Involved in Metal Transport in Rice. Nozoye T, et al. J Biol Chem, 2015 Nov 13. PMID 26432636, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Names
    Os11g0135000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      1671334..1676240 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305727.1 → XP_066161824.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X6

    2. XM_026021370.2 → XP_025877155.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X4

      UniProtKB/TrEMBL
      B8BIY0
      Conserved Domains (1) summary
      pfam07690
      Location:46 → 384
      MFS_1; Major Facilitator Superfamily

    3. XM_015759628.3 → XP_015615114.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X5

      UniProtKB/TrEMBL
      B8BIY0, Q2RAW5
      Conserved Domains (1) summary
      cd17330
      Location:37 → 418
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    4. XM_015759627.3 → XP_015615113.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J8XGK9, B8BIY0, B9G997, Q0IUT8, Q2RAW4
      Conserved Domains (1) summary
      cd17330
      Location:37 → 460
      MFS_SLC46_TetA_like; Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters

    5. XM_026021369.2 → XP_025877154.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X3

      UniProtKB/TrEMBL
      B8BIY0
      Conserved Domains (1) summary
      pfam07690
      Location:72 → 405
      MFS_1; Major Facilitator Superfamily

    6. XM_026021368.2 → XP_025877153.1  protein ZINC INDUCED FACILITATOR-LIKE 1 isoform X1

      UniProtKB/TrEMBL
      B8BIY0
      Conserved Domains (1) summary
      pfam07690
      Location:72 → 447
      MFS_1; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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